Add cluster centers extraction

master
Aleksey Filippov 1 year ago
parent f4a32bf57f
commit 155b350e1e

@ -1,59 +1,73 @@
#!/usr/bin/env python3
import os
import sys
from typing import List
import numpy
import numpy as np
import pandas as pd
# import scipy.cluster.hierarchy as sc
import scipy.cluster.hierarchy as sc
from matplotlib import pyplot as plt
from pandas import DataFrame
from numpy import ndarray
from pandas import Series
from sklearn.cluster import AgglomerativeClustering
from sklearn.decomposition import PCA
from src.main.df_loader import DfLoader
from src.main.georeverse import Georeverse
is_plots: bool = False
default_clusters: int = 3
georeverse: Georeverse = Georeverse()
def __clustering(data: DataFrame) -> None:
# clusters = round(math.sqrt(len(data) / 2))
# plt.figure(figsize=(20, 7))
# plt.title("Dendrograms")
# # Create dendrogram
# sc.dendrogram(sc.linkage(data.to_numpy(), method='ward'))
# plt.title('Dendrogram')
# plt.xlabel('Sample index')
# plt.ylabel('Euclidean distance')
clusters = 3
model = AgglomerativeClustering(n_clusters=clusters, metric='euclidean', linkage='ward')
model.fit(data)
labels = model.labels_
def __plots(data: ndarray, labels: ndarray) -> None:
plt.figure(figsize=(12, 6))
plt.subplot(1, 2, 1)
sc.dendrogram(sc.linkage(data, method='ward'), p=4, truncate_mode='level')
plt.title('Dendrogram')
pca = PCA(n_components=2)
transformed = pd.DataFrame(pca.fit_transform(data)).to_numpy()
plt.subplot(1, 2, 2)
plt.scatter(x=transformed[:, 0], y=transformed[:, 1], c=labels, cmap='rainbow')
plt.title('Clustering')
plt.show()
data_norm = (data - data.min()) / (data.max() - data.min())
pca = PCA(n_components=2) # 2-dimensional PCA
transformed = pd.DataFrame(pca.fit_transform(data_norm))
# plt.scatter(x=transformed[:, 0], y=transformed[:, 1], c=labels, cmap='rainbow')
for i in range(clusters):
series = transformed.iloc[numpy.where(labels[:] == i)]
plt.scatter(series[0], series[1], label=f'Cluster {i + 1}')
plt.legend()
plt.show()
def __get_cluster_centers(data: ndarray, labels: ndarray) -> ndarray:
centers: List[List[float]] = list()
for label in set(labels):
center: Series = data[numpy.where(labels[:] == label)].mean(axis=0)
centers.append(list(center))
return np.array(centers)
# fig, axes = plt.subplots(nrows=1, ncols=2, figsize=(15, 5))
# sns.scatterplot(ax=axes[0], data=data, x='location-la,location-lo', y='age,sex').set_title('Without clustering')
# sns.scatterplot(ax=axes[1], data=data, x='location-la,location-lo', y='age,sex', hue=labels) \
# .set_title('With clustering')
# plt.show()
# s = numpy.where(labels[:] == 34)
# print(labels)
def __print_center(center: ndarray) -> None:
location: str = georeverse.get_city(center[0], center[1])
sex = round(center[2])
age = round(center[3])
is_university = bool(round(center[4]))
is_work = bool(round(center[5]))
is_student = bool(round(center[6]))
is_schoolboy = bool(round(center[7]))
print(f'location: {location}, sex: {sex}, age: {age},'
f' univer: {is_university}, work: {is_work}, student: {is_student}, school: {is_schoolboy}')
def __clustering(data: ndarray, n_clusters: int = 3, plots: bool = False) -> None:
model = AgglomerativeClustering(n_clusters=n_clusters, metric='euclidean', linkage='ward')
model.fit(data)
labels = model.labels_
if plots:
__plots(data, labels)
centers = __get_cluster_centers(data, labels)
for center in centers:
__print_center(center)
def __main(json_file):
df_loader: DfLoader = DfLoader(json_file)
data = df_loader.get_clustering_data()
print(data)
__clustering(data)
data: ndarray = DfLoader(json_file).get_data()
__clustering(data, default_clusters, is_plots)
if __name__ == '__main__':

@ -0,0 +1,12 @@
from functools import partial
from geopy import Nominatim
class Georeverse:
def __init__(self) -> None:
geolocator: Nominatim = Nominatim(user_agent="MyApp")
self.__reverse = partial(geolocator.reverse, language="ru")
def get_city(self, latitude: float, longitude: float) -> str:
return self.__reverse(f'{latitude}, {longitude}')
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