50 lines
2.2 KiB
YAML
50 lines
2.2 KiB
YAML
---
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# The name of the profile. This is displayed in the user interface.
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name: Ontology for Biomedical Investigation (OBI)
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# A description of the profile. This is displayed in the user interface when deprecating an entity.
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description: >
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A profile for obsoletion of OWL entities in the Ontology for Biomedical Investigation (OBI)
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# Activated by the OBI ontology
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activatedBy: http://purl.obolibrary.org/obo/obi.owl
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# Specifies a prefix - NB Some terms in OBI are prefixed with "obsolete_" and others with "obsolete "
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labelPrefix: obsolete_
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# Specifies whether or not the logical definition of the deprecated entity should be removed
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# a value of true means that the logical definition will be removed. A value of false means that
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# the logical definition will not be removed
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removeLogicalDefinition: true
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# Specifies whether or not non-preserved annotations on the deprecated entity will be removed.
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# See the preservedAnnotationAssertionPropertyIris property.
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removeAnnotationAssertions: false
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# A list of annotation properties that will be preserved (not removed) during the deprecation.
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# It is not necessary to list rdfs:label as this is treated in a special way and not removed
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preservedAnnotationAssertionPropertyIris:
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- IAO:0000111 # Editor preferred term
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# Preserved annotations will be prefixed with this string
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annotationValuePrefix: obsolete_
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# If the deprecated entity has a direct replacement entity then this entity will be pointed to
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# with an annotation along the annotation property specified here.
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replacedByAnnotationPropertyIri: IAO:0100001
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# If the deprecated entity does not have a direct replacement then it may be annotated with alternate
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# entities using the annotation property specified here
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alternateEntityAnnotationPropertyIri: rdfs:seeAlso
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# The annotation property that is used to provide an annotation that specifies a textual explanation
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# as to why the entity was deprecated
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textualReasonAnnotationPropertyIri: IAO:0000116
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deprecatedClassParentIri: http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
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deprecationCode:
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property: IAO:0000231 # has obsolesence reason
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valueSet:
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type: Individuals
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classIri: IAO:0000225 # Obsolescence reason specification |