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          "ontology_purl": "http://purl.obolibrary.org/obo/obi.owl",
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          "user": "http://planteome.org/"
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        {
          "description": "Maize CELL genomics DB uses PO to annotate images",
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          "user": "http://maize.jcvi.org/"
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        {
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          "user": "http://maizegdb.org/"
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          "description": "Gramene uses PO for the annotation of plant genes",
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          "user": "http://gramene.org/"
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        "label": "Darren Natale"
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        "id_policy": "https://pir17.georgetown.edu/confluence/display/PROWIKI/PRO+PURLs"
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      "domain": "proteins",
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      "layout": "ontology_detail",
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          "description": "PRO after reasoning has been applied, OBO format.",
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      "publications": [
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          "title": "Publications & Dissemination"
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      "title": "PRotein Ontology (PRO)",
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    },
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      "activity_status": "active",
      "build": {
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        "method": "obo2owl",
        "source_url": "https://raw.githubusercontent.com/xenopus-anatomy/xao/master/xenopus_anatomy.obo"
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      "contact": {
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        "github": "seger",
        "label": "Erik Segerdell"
      },
      "description": "Anatomy and development of the African clawed frog (<i>Xenopus laevis</i>).",
      "domain": "anatomy",
      "homepage": "http://www.xenbase.org/anatomy/xao.do?method=display",
      "id": "xao",
      "in_foundry_order": 1,
      "layout": "ontology_detail",
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        "label": "CC-BY",
        "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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      },
      "ontology_purl": "http://purl.obolibrary.org/obo/xao.owl",
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          "id": "xao.owl",
          "ontology_purl": "http://purl.obolibrary.org/obo/xao.owl"
        },
        {
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          "ontology_purl": "http://purl.obolibrary.org/obo/xao.obo"
        }
      ],
      "publications": [
        {
          "id": "http://www.ncbi.nlm.nih.gov/pubmed/18817563",
          "title": "An ontology for Xenopus anatomy and development."
        },
        {
          "id": "http://www.ncbi.nlm.nih.gov/pubmed/24139024",
          "title": "Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase."
        }
      ],
      "taxon": {
        "id": "NCBITaxon:8353",
        "label": "Xenopus"
      },
      "title": "Xenopus Anatomy Ontology",
      "tracker": "https://github.com/xenopus-anatomy/xao/issues"
    },
    {
      "activity_status": "active",
      "build": {
        "infallible": 1,
        "method": "obo2owl",
        "notes": "may be ready to switch to vcs soon",
        "source_url": "https://raw.githubusercontent.com/cerivs/zebrafish-anatomical-ontology/master/src/zebrafish_anatomy.obo"
      },
      "contact": {
        "email": "van_slyke@zfin.org",
        "github": "cerivs",
        "label": "Ceri Van Slyke"
      },
      "description": "A structured controlled vocabulary of the anatomy and development of the Zebrafish",
      "domain": "anatomy",
      "homepage": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources",
      "id": "zfa",
      "in_foundry_order": 1,
      "layout": "ontology_detail",
      "license": {
        "label": "CC-BY",
        "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
        "url": "http://creativecommons.org/licenses/by/3.0/"
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      "ontology_purl": "http://purl.obolibrary.org/obo/zfa.owl",
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          "ontology_purl": "http://purl.obolibrary.org/obo/zfa.owl"
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        {
          "id": "zfa.obo",
          "ontology_purl": "http://purl.obolibrary.org/obo/zfa.obo"
        }
      ],
      "publications": [
        {
          "id": "http://www.ncbi.nlm.nih.gov/pubmed/24568621",
          "title": "The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio."
        }
      ],
      "taxon": {
        "id": "NCBITaxon:7954",
        "label": "Danio"
      },
      "title": "Zebrafish anatomy and development ontology",
      "tracker": "https://github.com/cerivs/zebrafish-anatomical-ontology/issues",
      "usages": [
        {
          "description": "ZFIN uses ZFA to annotate gene expression and phenotype",
          "examples": [
            {
              "description": "zebrafish genes expressed in hindbrain and genotypes with hindbrain phenotype",
              "url": "http://zfin.org/ZFA:0000029"
            }
          ],
          "user": "http://zfin.org"
        }
      ]
    },
    {
      "activity_status": "active",
      "build": {
        "checkout": "git clone https://github.com/obophenotype/human-developmental-anatomy-ontology.git",
        "method": "vcs",
        "path": "src/ontology",
        "system": "git"
      },
      "contact": {
        "email": "J.Bard@ed.ac.uk",
        "label": "Jonathan Bard"
      },
      "description": "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology",
      "domain": "anatomy",
      "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology/",
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      "layout": "ontology_detail",
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        "label": "CC-BY 4.0",
        "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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      "ontology_purl": "http://purl.obolibrary.org/obo/aeo.owl",
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        {
          "id": "aeo.owl",
          "ontology_purl": "http://purl.obolibrary.org/obo/aeo.owl"
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      ],
      "title": "Anatomical Entity Ontology"
    },
    {
      "activity_status": "active",
      "build": {
        "checkout": "git clone  https://github.com/AgriculturalSemantics/agro.git",
        "infallible": 1,
        "method": "vcs",
        "path": ".",
        "system": "git"
      },
      "contact": {
        "email": "m.a.laporte@cgiar.org",
        "github": "marieALaporte",
        "label": "Marie-Ang\u00e9lique Laporte"
      },
      "dependencies": [
        {
          "id": "envo"
        },
        {
          "id": "uo"
        },
        {
          "id": "ro"
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        {
          "id": "pato"
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        {
          "id": "chebi"
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        {
          "id": "iao"
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      "description": "Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments",
      "domain": "agronomy",
      "homepage": "https://github.com/AgriculturalSemantics/agro",
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      "jobs": [
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      ],
      "layout": "ontology_detail",
      "license": {
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        "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
        "url": "https://creativecommons.org/licenses/by/4.0/"
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      "mailing_list": "https://groups.google.com/group/agronomyOntology",
      "ontology_purl": "http://purl.obolibrary.org/obo/agro.owl",
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        {
          "id": "agro.owl",
          "ontology_purl": "http://purl.obolibrary.org/obo/agro.owl"
        }
      ],
      "title": "Agronomy Ontology",
      "tracker": "https://github.com/AgriculturalSemantics/agro/issues/"
    },
    {
      "activity_status": "active",
      "build": {
        "method": "obo2owl",
        "source_url": "https://raw.githubusercontent.com/obophenotype/ascomycete-phenotype-ontology/master/apo.obo"
      },
      "contact": {
        "email": "stacia@stanford.edu",
        "github": "srengel",
        "label": "Stacia R Engel"
      },
      "description": "A structured controlled vocabulary for the phenotypes of Ascomycete fungi",
      "domain": "phenotype",
      "homepage": "http://www.yeastgenome.org/",
      "id": "apo",
      "layout": "ontology_detail",
      "license": {
        "label": "CC BY 4.0",
        "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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      "ontology_purl": "http://purl.obolibrary.org/obo/apo.owl",
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        {
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          "ontology_purl": "http://purl.obolibrary.org/obo/apo.obo"
        }
      ],
      "taxon": {
        "id": "NCBITaxon:4890",
        "label": "Ascomycota"
      },
      "title": "Ascomycete phenotype ontology"
    },
    {
      "activity_status": "active",
      "contact": {
        "email": "MBrochhausen@uams.edu",
        "label": "Mathias Brochhausen"
      },
      "description": "Defines terms and relations necessary for interoperation between epidemic models and public health application software that interface with these models",
      "domain": "health",
      "homepage": "https://github.com/ApolloDev/apollo-sv",
      "id": "apollo_sv",
      "layout": "ontology_detail",
      "license": {
        "label": "CC-BY 3.0",
        "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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      "ontology_purl": "http://purl.obolibrary.org/obo/apollo_sv.owl",
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          "ontology_purl": "http://purl.obolibrary.org/obo/apollo_sv.owl"
        }
      ],
      "title": "Apollo Structured Vocabulary",
      "tracker": "https://github.com/ApolloDev/apollo-sv/issues"
    },
    {
      "activity_status": "active",
      "contact": {
        "email": "card@mcmaster.ca",
        "github": "raphenya",
        "label": "CARD"
      },
      "description": "Antibiotic resistance genes and mutations",
      "homepage": "https://github.com/arpcard/aro",
      "id": "aro",
      "layout": "ontology_detail",
      "license": {
        "label": "CC-BY",
        "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
        "url": "https://creativecommons.org/licenses/by/4.0/"
      },
      "mailing_list": "https://mailman.mcmaster.ca/mailman/listinfo/card-l",
      "ontology_purl": "http://purl.obolibrary.org/obo/aro.owl",
      "products": [
        {
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          "ontology_purl": "http://purl.obolibrary.org/obo/aro.owl"
        }
      ],
      "title": "Antibiotic Resistance Ontology",
      "tracker": "https://github.com/arpcard/aro/issues"
    },
    {
      "activity_status": "active",
      "contact": {
        "email": "jiezheng@pennmedicine.upenn.edu",
        "github": "zhengj2007",
        "label": "Jie Zheng"
      },
      "description": "An application ontology built for beta cell genomics studies.",
      "homepage": "https://github.com/obi-bcgo/bcgo",
      "id": "bcgo",
      "in_foundry": false,
      "layout": "ontology_detail",
      "license": {
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        "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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      },
      "ontology_purl": "http://purl.obolibrary.org/obo/bcgo.owl",
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          "ontology_purl": "http://purl.obolibrary.org/obo/bcgo.owl"
        }
      ],
      "title": "Beta Cell Genomics Ontology",
      "tracker": "https://github.com/obi-bcgo/bcgo/issues"
    },
    {
      "activity_status": "active",
      "contact": {
        "email": "rlwalls2008@gmail.com",
        "github": "ramonawalls",
        "label": "Ramona Walls"
      },
      "description": "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys.",
      "homepage": "https://github.com/tucotuco/bco",
      "id": "bco",
      "in_foundry": false,
      "layout": "ontology_detail",
      "license": {
        "label": "CC-0",
        "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
        "url": "https://creativecommons.org/publicdomain/zero/1.0/"
      },
      "ontology_purl": "http://purl.obolibrary.org/obo/bco.owl",
      "products": [
        {
          "id": "bco.owl",
          "ontology_purl": "http://purl.obolibrary.org/obo/bco.owl"
        }
      ],
      "title": "Biological Collections Ontology",
      "tracker": "https://github.com/tucotuco/bco/issues"
    },
    {
      "activity_status": "active",
      "build": {
        "checkout": "git clone https://github.com/obophenotype/biological-spatial-ontology.git",
        "infallible": 1,
        "method": "vcs",
        "path": "src/ontology",
        "system": "git"
      },
      "contact": {
        "email": "cjmungall@lbl.gov",
        "github": "cmungall",
        "label": "Chris Mungall"
      },
      "description": "An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces",
      "domain": "anatomy",
      "homepage": "https://github.com/obophenotype/biological-spatial-ontology",
      "id": "bspo",
      "layout": "ontology_detail",
      "license": {
        "label": "CC-BY",
        "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
        "url": "http://creativecommons.org/licenses/by/3.0/"
      },
      "ontology_purl": "http://purl.obolibrary.org/obo/bspo.owl",
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          "ontology_purl": "http://purl.obolibrary.org/obo/bspo.owl"
        },
        {
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          "ontology_purl": "http://purl.obolibrary.org/obo/bspo.obo"
        }
      ],
      "publications": [
        {
          "id": "http://www.ncbi.nlm.nih.gov/pubmed/25140222",
          "title": "Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology."
        }
      ],
      "title": "Biological Spatial Ontology",
      "tracker": "https://github.com/obophenotype/biological-spatial-ontology/issues"
    },
    {
      "activity_status": "active",
      "build": {
        "insert_ontology_id": true,
        "method": "obo2owl",
        "source_url": "http://www.brenda-enzymes.info/ontology/tissue/tree/update/update_files/BrendaTissueOBO"
      },
      "contact": {
        "email": "a.chang@tu-bs.de",
        "label": "Antje Chang"
      },
      "description": "A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures.",
      "domain": "anatomy",
      "homepage": "http://www.brenda-enzymes.info",
      "id": "bto",
      "layout": "ontology_detail",
      "license": {
        "label": "CC BY-ND 4.0",
        "url": "https://creativecommons.org/licenses/by-nd/4.0/"
      },
      "ontology_purl": "http://purl.obolibrary.org/obo/bto.owl",
      "page": "https://en.wikipedia.org/wiki/BRENDA_tissue_ontology",
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          "ontology_purl": "http://purl.obolibrary.org/obo/bto.owl"
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      ],
      "publications": [
        {
          "id": "https://www.ncbi.nlm.nih.gov/pubmed/21030441",
          "title": "The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources"
        }
      ],
      "title": "BRENDA tissue / enzyme source"
    },
    {
      "activity_status": "active",
      "build": {
        "method": "obo2owl",
        "notes": "moving to owl soon",
        "source_url": "http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/caro/caro.obo"
      },
      "contact": {
        "email": "haendel@ohsu.edu",
        "github": "mellybelly",
        "label": "Melissa Haendel"
      },
      "description": "An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species",
      "domain": "anatomy",
      "homepage": "https://github.com/obophenotype/caro/",
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      "layout": "ontology_detail",
      "license": {
        "label": "CC-BY 3.0",
        "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
        "url": "https://creativecommons.org/licenses/by/3.0/"
      },
      "ontology_purl": "http://purl.obolibrary.org/obo/caro.owl",
      "products": [
        {
          "id": "caro.owl",
          "ontology_purl": "http://purl.obolibrary.org/obo/caro.owl"
        }
      ],
      "title": "Common Anatomy Reference Ontology",
      "tracker": "https://github.com/obophenotype/caro/issues"
    },
    {
      "activity_status": "active",
      "build": {
        "method": "owl2obo",
        "source_url": "http://purl.obolibrary.org/obo/cdao.owl"
      },
      "contact": {
        "email": "balhoff@renci.org",
        "label": "Jim Balhoff"
      },
      "description": "a formalization of concepts and relations relevant to evolutionary comparative analysis",
      "homepage": "https://github.com/evoinfo/cdao",
      "id": "cdao",
      "layout": "ontology_detail",
      "license": {
        "label": "CC0 1.0 Universal",
        "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
        "url": "https://creativecommons.org/publicdomain/zero/1.0/"
      },
      "ontology_purl": "http://purl.obolibrary.org/obo/cdao.owl",
      "products": [
        {
          "id": "cdao.owl",
          "ontology_purl": "http://purl.obolibrary.org/obo/cdao.owl"
        }
      ],
      "title": "Comparative Data Analysis Ontology"
    },
    {
      "activity_status": "active",
      "build": {
        "method": "owl2obo",
        "source_url": "https://raw.githubusercontent.com/semanticchemistry/semanticchemistry/master/ontology/cheminf.owl"
      },
      "contact": {
        "email": "egon.willighagen@gmail.com",
        "label": "Egon Willighagen"
      },
      "description": "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them.",
      "domain": "biochemistry",
      "homepage": "https://github.com/semanticchemistry/semanticchemistry",
      "id": "cheminf",
      "layout": "ontology_detail",
      "license": {
        "label": "CC BY 4.0",
        "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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      },
      "ontology_purl": "http://purl.obolibrary.org/obo/cheminf.owl",
      "products": [
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          "ontology_purl": "http://purl.obolibrary.org/obo/cheminf.owl"
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      ],
      "title": "Chemical Information Ontology"
    },
    {
      "activity_status": "active",
      "contact": {
        "email": "batchelorc@rsc.org",
        "github": "batchelorc",
        "label": "Colin Batchelor"
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      "description": "CHMO, the chemical methods ontology, describes methods used to",
      "domain": "health",
      "homepage": "https://github.com/rsc-ontologies/rsc-cmo",
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      "layout": "ontology_detail",
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        "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
        "url": "http://creativecommons.org/licenses/by/4.0/"
      },
      "mailing_list": "chemistry-ontologies@googlegroups.com",
      "ontology_purl": "http://purl.obolibrary.org/obo/chmo.owl",
      "products": [
        {
          "id": "chmo.owl",
          "ontology_purl": "http://purl.obolibrary.org/obo/chmo.owl"
        }
      ],
      "title": "Chemical Methods Ontology",
      "tracker": "https://github.com/rsc-ontologies/rsc-cmo/issues"
    },
    {
      "activity_status": "active",
      "build": {
        "checkout": "git clone https://github.com/obophenotype/cell-ontology.git",
        "email_cc": "cl_edit@googlegroups.com",
        "infallible": 1,
        "method": "vcs",
        "system": "git"
      },
      "canonical": "cl.owl",
      "contact": {
        "email": "addiehl@buffalo.edu",
        "github": "addiehl",
        "label": "Alexander Diehl"
      },
      "dependencies": [
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        },
        {
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        {
          "id": "ro"
        },
        {
          "id": "chebi"
        },
        {
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        }
      ],
      "description": "The Cell Ontology is a structured controlled vocabulary for cell types in animals.",
      "domain": "cells",
      "homepage": "https://github.com/obophenotype/cell-ontology",
      "id": "cl",
      "integration_server": "http://build.berkeleybop.org/job/build-cl/",
      "jobs": [
        {
          "id": "https://travis-ci.org/obophenotype/cell-ontology",
          "type": "travis-ci"
        }
      ],
      "label": "Cell Ontology",
      "layout": "ontology_detail",
      "license": {
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        "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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      },
      "mailing_list": "https://lists.sourceforge.net/lists/listinfo/obo-cell-type",
      "ontology_purl": "http://purl.obolibrary.org/obo/cl.owl",
      "products": [
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          "description": "Complete ontology, plus inter-ontology axioms, and imports modules",
          "format": "owl-rdf/xml",
          "id": "cl.owl",
          "is_canonical": true,
          "ontology_purl": "http://purl.obolibrary.org/obo/cl.owl",
          "title": "Main CL OWL edition",
          "uses": [
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            "chebi",
            "go",
            "pr",
            "pato"
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        },
        {
          "derived_from": "cl.owl",
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          "format": "obo",
          "id": "cl.obo",
          "ontology_purl": "http://purl.obolibrary.org/obo/cl.obo",
          "title": "CL obo format edition"
        },
        {
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          "format": "obo",
          "id": "cl/cl-basic.obo",
          "ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-basic.obo",
          "title": "Basic CL"
        },
        {
          "description": "complete CL but with no imports or external axioms",
          "id": "cl/cl-base.owl",
          "ontology_purl": "http://purl.obolibrary.org/obo/cl/cl-base.owl",
          "title": "CL base module"
        }
      ],
      "taxon": {
        "id": "NCBITaxon:33208",
        "label": "Metazoa"
      },
      "termgenie": "http://cl.termgenie.org",
      "title": "Cell Ontology",
      "tracker": "https://github.com/obophenotype/cell-ontology/issues",
      "usages": [
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          "seeAlso": "https://www.biosharing.org/biodbcore-000034",
          "type": "annotation",
          "user": "https://www.encodeproject.org/"
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      "taxon": {
        "id": "NCBITaxon:44484",
        "label": "Anopheles"
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      "title": "Mosquito gross anatomy ontology"
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        "label": "Viridiplantae"
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        "source_url": "https://raw.githubusercontent.com/DiseaseOntology/PathogenTransmissionOntology/master/src/ontology/trans.obo"
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        "email": "lynn.schriml@gmail.com",
        "label": "Lynn Schriml"
      },
      "description": "An ontology representing the disease transmission process during which the pathogen is transmitted directly or indirectly from its natural reservoir, a susceptible host or source to a new host.",
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          "ontology_purl": "http://purl.obolibrary.org/obo/trans.obo"
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      "title": "Pathogen Transmission Ontology",
      "tracker": "https://github.com/DiseaseOntology/PathogenTransmissionOntology/issues"
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        "label": "Teleostei"
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      "title": "Teleost taxonomy ontology",
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          "match": "",
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      "contact": {
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